BOMP (Burden or Mutation Position gene scoring tool)
software uses a novel hybrid likelihood model to identify phenotype-associated genes from sequencing data in case/control study designs.
BOMP runs on Java >= 1.6.0 Current release is BOMP 1.0. last updated on 01/23/2013.
BOMP is free for non-commercial use. Commercial users should contact the Johns Hopkins Technology Transfer office.
Documentation for the user
BOMP jar file here. The jar file should be installed in your Java path.
- (L) Burden and Position Distribution statistics
- (R) How is BOMP different from VT and SKAT?
Documentation for the developer
BOMP source code here For
documentation details, please contact the
- Short tutorial on how to run BOMP
- If you use BOMP in a publication, please cite:
Chen YC, Carter H, Parla J, Kramer M, Goes FS, Pirooznia M, Zandi PP, McCombie WR, Potash JB, Karchin R (2013)
A hybrid likelihood model for sequence-based disease association studies PLoS Genetics. 9(1): e1003224
Yun-ching Chen yunching dot chen at gmail dot com
Software primary contact/developer
This is a beta version of the BOMP documentation page. Please contact the primary developer with feedback, suggestions, and requests to improve this page.