Category: Software Tools

SVCFit

[github]  [pub] Clonal evolution of structural variants in cancer

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PICTographPlus

[github]  [pub] Deconvolute bulk tumor transcriptional clones

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TCRtoolkit

[github] Pipeline for TCR repertoire analysis

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openCRAVAT

[url]  [github]  [pub] A modular annotation tool for genomic variants

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PICTograph

[github]  [pub] Bayesian method to model tumor evolution

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BigMHC

[github]  [pub] Predict immunogenic neoepitopes with deep learning

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CHASM

[pub] Random Forest predicts driver missense mutations

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3D-CLUMP

[github]  [pub] Case-control clustering of variants in 3D

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CLUMP

[github]  [pub] Case-control clustering of variants in 1D

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VEST

[url]  [pub] Predict pathogenic variants

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