Category: Software Tools

TCRtoolkit

[github] Pipelines for TCR repertoire analysis

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3D-CLUMP

[github]  [pub] Case-control clustering of variants in 3D

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CLUMP

[github]  [pub] Case-control clustering of variants in 1D

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VEST

[url]  [pub] Predict pathogenic variants

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SCHISM

[github]  [pub] Infer clonal evolutionary history of tumors

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20/20+

[github]  [pub] Cancer driver gene prediction

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HotMAPS

[github]  [pub] 3D hotspot mutation identification

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MHCnuggets

[github]  [pub] Neoantigen prediction with deep learning

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CHASMplus

[github]  [pub] Cancer-specific driver mutation prediction

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PICTograph

[github]  [pub] Bayesian method to model tumor evolution

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