Category: Preprints

SpliceMutr enables pan-cancer analysis of splicing-derived neoantigen burden in tumors S

Palmer T, Kessler MD, Shao XM, Balan A, Yarchoan M, Zaidi N, Lopez-Vidal TY, Saeed A, Gore J, Azad NS, Favorov AV, Anagnostou V, Karchin R, Gaykalova DA, Danilova L, Fertig EJ (2024) SpliceMutr enables pan-cancer analysis of splicing-derived neoantigen burden in tumors bioRxiv, May 26. doi: 10.1101/2023.05.26.542165

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Islands of genomic stability in the face of genetically unstable metastatic cancer I

Bowland K, Lai J, Skaist A, Zhang Y, Teh SSK, Robert NJ, Thompson E, Wheelan SJ, Hruban RH, Karchin R, Iacobuzio-Donahue C, Eshleman JR (2024) Islands of genomic stability in the face of genetically unstable metastatic cancer PMID: 38352348, PMCID: PMC10862738, DOI: 10.1101/2024.01.26.577508

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Evaluation of simulation methods for tumor subclonal reconstruction E

Lai J, Liu Y, Scharpf RB, Karchin R. (2024). Evaluation of simulation methods for tumor subclonal reconstruction arXiv. Feb 14; 2402.09599

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Proteome-Wide Assessment of Clustering of Missense Variants in Neurodevelopmental Disorders Versus Cancer P

Ng JK, Chen Y, Akinwe TM, Heins HB, Mehinovic E, Chang Y, Payne ZL, Manuel JG, Karchin R, Turner TN. Proteome-Wide Assessment of Clustering of Missense Variants in Neurodevelopmental Disorders Versus Cancer. Feb 4, 2024. medRxiv

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