Dr. Elana Fertig
Dr. Elana Fertig
Collaborative Projects
Publications
- Lai, J., Yang, Y., Noller, K., Liu, Y., Balan, A., Nagendra, P., Kagohara, L. T., Fertig, E. J., Wood, L. D., & Karchin, R. Reconstructing clone-resolved transcriptional programs from bulk tumor sequencing. bioRxiv. January 15 2026. doi: 10.64898/2026.01.15.699695
- Noller K, Lai J, Lesperance D, Adkins RS, Elhossiny A, Guerrero PA, Rajapakshe KI, Maitra A, Giglio M, Mahurkar A, White O, Di Magliano MP, Ochs MF, Kagohara LT, Wood LD, Karchin R, Fertig EJ. Integrative analysis of genomic and transcriptomic data informs precancer progression in the pancreas. bioRxiv [Preprint]. 2025 Nov 4:2025.11.03.686234. doi: 10.1101/2025.11.03.686234. PMID: 41279473; PMCID: PMC12637499.
- Lyman MR, Mitchell JT, Raghavan S, Kagohara LT, Huff AL, Haldar SD, Shin SM, Guinn S, Barrett B, Longway G, Hernandez A, Coyne EM, Yuan X, Andaloori L, Lai J, Liu YZ, Karchin R, Gupta A, Kiemen AL, Forjaz A, Wirtz D, Wu PH, Deshpande A, Lee JW, Armstrong TD, Azad NS, Zimmerman JW, Wood LD, Anders RA, Thompson ED, Jaffee EM, Fertig EJ, Ho WJ, Zaidi N. Spatial Proteomics and Transcriptomics Reveal Early Immune Cell Organization in Pancreatic Intraepithelial Neoplasia. JCI Insight. 2025 Jun 26:e191595. doi: 10.1172/jci.insight.191595. Epub ahead of print. PMID: 40569674.
- Noller K, Botsis T, Camara PG, Ciotti L, Cooper LA, Goecks J, Griffith M, Haas BJ, Ideker T, Karchin R, Kontos D, Lai J, Marcus D, Meyer CA, Naegle K, Pati S, Peters B, Pratt D, Raphael BJ, Reich M, Savova GK, Wright C, Fertig EJ, Bakas S. Informatics at the Frontier of Cancer Research. Cancer Res. 2025 Jul 2. doi: 10.1158/0008-5472.CAN-24-2829. Epub ahead of print. PMID: 40600473.
- Rettig EM, Talbot Jr CC, Sausen M, Jones S, Bishop JA, Wood LD, Tokheim C, Niknafs N, Karchin R, Papadopoulos N, Fertig EJ, Wheelan SJ, Marchionni L, Considine M, Ling S, Fakhry C, Papadopolous N, Kinzler KW, Vogelstein B, Ha PK, Agrawal N (2016) Whole-genome sequencing of salivary gland adenoid cystic carcinoma. Cancer Prevention Research. 2016 Apr;9(4):265-74. doi: 10.1158/1940-6207.CAPR-15-0316.