Katzman S, Barrett C, Thiltgen G, Karchin R, Karplus K (2008) Predict-2nd: a tool for generalized protein local structure prediction Bioinformatics. Nov 1;24(21):2453-9.

Parsons DW, Jones S, Zhang X, Lin J, Leary RJ, Angenendt P, Mankoo P, Carter H, Su IM, Gallia G, Olivi A, McLendon R, Rasheed BA, Keir S, Nikolskaya T, Nikolsky Y, Busam DA, Tekleab H, Diaz LA, Hartigan J, Smith DR, Strausberg RL, Marie SKN, Shinjo SMO, Yan H, Riggins GJ, Bigner DD, Karchin …

Jones S, Zhang X, Parsons DW, Lin J, Leary RJ, Angenendt P, Mankoo P, Carter H, Kamiyama H, Jimeno A, Hong SM, Fu, B, Lin, MT, Calhoun ES, Kamiyama M, Walter K, Nikolskaya T, Nikolsky Y, Hartigan J, Smith DR, Hidalgo M, Leach SD, Klein AP, Jaffee EM, Goggins M, Maitra A, Iacobuzio-Donahue C, Eshleman, …

Mankoo P, Sukumar S, Karchin R. (2008) PIK3CA somatic mutations in breast cancer: mechanistic insights from Langevin dynamics simulations. Proteins Sep 10;75(2):499-508

Karchin R, Couch F, Agarwal M, Sali A,& Beattie M.S.(2008) Classifying BRCA2 unclassified variants using protein likelihood ratios. Cancer Informatics 4:1-14