Category: 2009

Detecting species-site dependencies in large multiple sequence alignments D

Schwarz R, Seibel PN, Rahmann S, Schoen C, Huenerberg M, Müller-Reible C, Dandekar T, Karchin R, Schultz J, Müller T. (2009) Detecting species-site dependencies in large multiple sequence alignments. Nucleic Acids Res. 37(18):5959-68

Read on
Cancer-specific high-throughput annotation of somatic mutations: computational prediction of driver missense mutations C

Carter H, Chen S, Isik L, Tyekucheva S, Velculescu VE, Kinzler KW, Vogelstein B, Karchin R.(2009) Cancer-specific high-throughput annotation of somatic mutations: computational prediction of driver missense mutations.Cancer Research. 69(16):6660-7

Read on
Analysis of a set of missense, frameshift, and in-frame deletion variants of BRCA1 A

Carvalho M, Pino MA, Karchin R, Beddor J, Godinho-Netto M, Mesquita RD, Rodarte RS, Vaz DC, Monteiro VA, Manoukian S, Colombo M, Ripamonti C, Rosenquist-Brandell R, Suthers G, Borg A, Radice P, Grist SA, Monteiro ANA and Billack B. (2009) Analysis of missense, frameshift, and in-frame deletion variants of BRCA1. Mutation Research. Jan 15;660(1-2):1-11.

Read on
MODBASE, a database of annotated comparative protein structure models and associated resources M

Pieper U, Eswar N, Webb BM, Eramian D, Kelly L, Barkan D, Carter H, Mankoo P, Karchin R, Marti-Renom M, Davis F and Sali A. (2009) MODBASE, a database of annotated comparative structure models, and associated resources. Nucleic Acids Res, 37 (Database issue):D347-54.

Read on
Next generation tools for the annotation of human SNPs N

Karchin R. (2009) Next generation tools for the annotation of human SNPs. Briefing in Bioinformatics. 10(1):35-52

Read on